SNP Profiles matching MARPER 45

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 Key

 1234567891011121314
_Input profile
ATGTAGCTGGAGCCTTCCTTGGGTTTCC
1._ICS_1
ATGTAGCTGGAGCCTTCCTTGGGT_CC
2._ICS_1
ATGTAGCTGGAGCCTTCCTTGGGT_CC
3._ICS_1
ATGTAGCTGGAGCCTTCCTTGGGT_CC
4._ICS_1
ATGTAGCTGGAGCCTTCCTTGGGT_CC
5._ICS_1
ATGTAGCTGGAGCCTTCCTTGGGT_CC
6._PA_70_[PER]
ATGTAGCTGGAGCCTTCCTTGGGT_CC
7._ICS_1
ATGTAGCTGGAGCCTT_TTGGGT_CC
8._ICS_1
ATGTAGCTGG_CCTTCCTTGGGT_CC
9._RUQ_847
_GTAGCT_AGCCTTCCTT_GT_CC
10._RUQ_817
_GTAGCT_AGCCTTCCTT_GT_CC
11._RUQ_847
ATGTAGCTGGAGCCTTCCTTGGGT_CC
12._NA
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
13._NA
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
14._NA
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
15._NA
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
16._NA
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
17._GC-04-053-3-17
ATGTAGCTGGAGCCTTCCTTGGGTGGCC
18._NA
ATGTAGCTGGAGCCTT_TTGGGTGGCC
19._RUQ_847
ATGTAGCTGGAGCCCTCCCTGGGT_CC
20._RUQ_909
_GTAGCT_AGCCCTCCTT_GT_CC
21._RUQ_909
_GTAGCT_AGCCCTCCTT_GT_CC
22._RUQ_1537
_TTAGCC_AGCCTTCCTT_GT_CC
23._RUQ_854
_GTAGCT_AGCCTTCCTT_GG_CC
24._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
25._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
26._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
27._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
28._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
29._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
30._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
31._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
32._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
33._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
34._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
35._SLC_24
ATGTAGCCGGAACCTTCCCT_TT_CC
36._MARPER_34
AAGTAGTTGGAGCCCTCCCTGGGTTTCC
37._MARPER_55
ATGGAACCGGAGCCCTCCCTGGGTTTCC
38._EQX_/O_[CHA]
TTGTGGCCGGAGCCTTCGTTGGGT_CC
39._EQX_/O_[CHA]
TTGTGGCCGGAGCCTTCGTTGGGT_CC
40._EQX_/O_[CHA]
TTGTGGCCGGAGCCTTCGTTGGGT_CC
41._EQX_/O_[CHA]
TTGTGGCCGGAGCCTTCGTTGGGT_CC
42._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
43._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
44._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
45._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
46._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
47._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
48._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
49._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
50._OC_61_[VEN]
TTTTAGCCGGAACCTTCCTTGGGG_CC
51._SGU_54
TTGTAGCTGGAGCCCTCCTTAGGT_CC
 15161718192021222324252627 
_Input profile
GGAATTAGAAAACTCCAACTGGAATTX_X
1._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
2._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
3._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
4._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
5._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
6._PA_70_[PER]
GGAATTAGAAAACTCCAACTGGAATTX_X
7._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
8._ICS_1
GGAATTAGAAAACTCCAACTGGAATTX_X
9._RUQ_847
___AG_____CTGGAA_X_X
10._RUQ_817
___AG_____CTGGAA_X_X
11._RUQ_847
GGAATTAGAAAACTCCAACTGGAGTTX_X
12._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
13._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
14._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
15._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
16._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
17._GC-04-053-3-17
GGAATTAGAAAACTCCAACTGGAATTX_X
18._NA
GGAATTAGAAAACTCCAACTGGAATTX_X
19._RUQ_847
GGAATTAGAAAACTCCAACTGGAGTTX_X
20._RUQ_909
___AG_____CTCGAA_X_X
21._RUQ_909
___AG_____CTCGAA_X_X
22._RUQ_1537
___AG_____CTGGAA_X_X
23._RUQ_854
___AG_____CTCGAA_X_X
24._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
25._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
26._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
27._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
28._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
29._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
30._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
31._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
32._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
33._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
34._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
35._SLC_24
GGAATTAGAAAACTCCAACTGGAATTX_X
36._MARPER_34
GGAATTAGAAAACTCCAATTGGAATTX_X
37._MARPER_55
GGAATTAGAAAACTCCAACTGGAATTX_X
38._EQX_/O_[CHA]
GGAATTAGAAAACCCCAACTGGAATTX_X
39._EQX_/O_[CHA]
GGAATTAGAAAACCCCAACTGGAATTX_X
40._EQX_/O_[CHA]
GGAATTAGAAAACCCCAACTGGAATTX_X
41._EQX_/O_[CHA]
GGAATTAGAAAACCCCAACTGGAATTX_X
42._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
43._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
44._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
45._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
46._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
47._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
48._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
49._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
50._OC_61_[VEN]
GGAATTAGAAAACTCCAACTGGAATTX_X
51._SGU_54
GGAATTAGAAAACTCCAACTCGAACTX_X

Input profile: MARPER_45

 
 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

1._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

6._PA_70_[PER]

identical
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

7._ICS_1

identical
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

8._ICS_1

identical
25 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

9._ICS_1 RUQ_847

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._ICS_5 RUQ_817

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._ICS_1 RUQ_847

98.1 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._ICS_1 NA

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._PA_70_[PER] GC-04-053-3-17

96.3 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

18._ICS_1 NA

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._ICS_1 RUQ_847

94.2 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._CRU_124 RUQ_909

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._CRU_124 RUQ_909

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._MO_109 RUQ_1537

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._SNK_413 RUQ_854

92.9 %
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 6
 Dapeng Zhang, 2016

25._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 7
 Dapeng Zhang, 2016

26._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 8
 Dapeng Zhang, 2016

27._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 9
 Dapeng Zhang, 2016

28._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 10
 Dapeng Zhang, 2016

29._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 12
 Dapeng Zhang, 2016

30._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 14
 Dapeng Zhang, 2016

31._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 16
 Dapeng Zhang, 2016

32._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 17
 Dapeng Zhang, 2016

33._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 18
 Dapeng Zhang, 2016

34._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 2 > FP
 Dapeng Zhang, 2016

35._SLC_24

92 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8216 5 > FP
 Dapeng Zhang, 2016

36._MARPER_34

90.7 %
27 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

37._MARPER_55

90.7 %
27 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

38._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7522 4 > FP
 Dapeng Zhang, 2016

39._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7522 2 > FP
 Dapeng Zhang, 2016

40._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 3
 Dapeng Zhang, 2016

41._EQX_/O_[CHA]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

42._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 5 > FP
 Dapeng Zhang, 2016

43._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 4 > FP
 Dapeng Zhang, 2016

44._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 3 > FP
 Dapeng Zhang, 2016

45._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

46._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

47._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 5 > FP
 Dapeng Zhang, 2016

48._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 4 > FP
 Dapeng Zhang, 2016

49._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 3 > FP
 Dapeng Zhang, 2016

50._OC_61_[VEN]

90.4 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5140 1 > FP
 Dapeng Zhang, 2016

51._SGU_54

90.4 %
26 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520